MLOC_51938 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.88312.048712.460152.22895
LEAShoots from the seedlings (10 cm shoot stage)7.6747113.47384.42817.24184
INF1Young developing inflorescences (5mm)0.3431530.3252020.1993590.260322
INF2Developing inflorescences (1-1.5 cm)0.5099970.4711660.4487310.536581
ROORoots from the seedlings (10 cm shoot stage)2.05673.697211.657014.11136
NODDeveloping tillers at six leaf stage, 3rd internode2.377331.857212.339866.30297
CAR5Developing grain, bracts removed (5 DPA)1.840771.894482.548012.09445
CAR15Developing grain, bracts removed (15 DPA)0.2320830.4398740.2910180.779883



CDS Structure of MLOC_51938






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51938.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373541NoneNoneNoneNone
MLOC_51938.1CUST_2899_PI427708080AvailableAvailablecontig_37167 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g16090.1 -3 0.0 872 426/508 (84%) 13103.m01902 protein LIM domain-containing protein, putative, expressed
TAIR PP10 AT2G39830.1 -3 0.0 585 297/502 (59%) | Symbols: DAR2 | DA1-related protein 2 | chr2:16619950-16623658 REVERSE LENGTH=528