- Predicted Gene MLOC_51904
MLOC_51904 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 0.886152 | 0.737974 | 0.68083 | 0.633723 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0.636014 | 0.791992 | 0.964327 | 0.481557 |
INF1 | Young developing inflorescences (5mm) | 0.0708033 | 0.130413 | 0 | 0.034748 |
INF2 | Developing inflorescences (1-1.5 cm) | 4.70622 | 0.601499 | 2.3271 | 2.52975 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.33764 | 0.157078 | 0.333181 | 0.12213 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.0955861 | 0.0576854 | 0.10423 | 0.120156 |
CAR5 | Developing grain, bracts removed (5 DPA) | 1.17472 | 1.7288 | 2.15731 | 1.36543 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.27049 | 1.83857 | 1.35927 | 3.39956 |
CDS Structure of MLOC_51904
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_51904.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os03g29770.1 |
+3 |
2e-73 |
229 |
117/129 (91%) |
13103.m03415 protein EF hand family protein, expressed |
TAIR PP10 |
AT2G44310.1 |
+3 |
6e-39 |
138 |
73/128 (57%) |
Calcium-binding EF-hand family protein | chr2:18309285-18309713 FORWARD LENGTH=142 |