MLOC_51904 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8861520.7379740.680830.633723
LEAShoots from the seedlings (10 cm shoot stage)0.6360140.7919920.9643270.481557
INF1Young developing inflorescences (5mm)0.07080330.13041300.034748
INF2Developing inflorescences (1-1.5 cm)4.706220.6014992.32712.52975
ROORoots from the seedlings (10 cm shoot stage)0.337640.1570780.3331810.12213
NODDeveloping tillers at six leaf stage, 3rd internode0.09558610.05768540.104230.120156
CAR5Developing grain, bracts removed (5 DPA)1.174721.72882.157311.36543
CAR15Developing grain, bracts removed (15 DPA)1.270491.838571.359273.39956



CDS Structure of MLOC_51904






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51904.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369905NoneNoneNoneNone
MLOC_51904.1CUST_2892_PI427708080AvailableAvailablecontig_37146 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g29770.1 +3 2e-73 229 117/129 (91%) 13103.m03415 protein EF hand family protein, expressed
TAIR PP10 AT2G44310.1 +3 6e-39 138 73/128 (57%) Calcium-binding EF-hand family protein | chr2:18309285-18309713 FORWARD LENGTH=142