MLOC_51901 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.9668922.39420.437515.7937
LEAShoots from the seedlings (10 cm shoot stage)16.471514.163612.225410.7821
INF1Young developing inflorescences (5mm)49.424734.719933.945330.0533
INF2Developing inflorescences (1-1.5 cm)29.470325.39926.624825.9453
ROORoots from the seedlings (10 cm shoot stage)7.8981817.078820.53915.9397
NODDeveloping tillers at six leaf stage, 3rd internode1.410411.475033.986535.09118
CAR5Developing grain, bracts removed (5 DPA)21.574625.175320.750518.8134
CAR15Developing grain, bracts removed (15 DPA)7.784349.424629.3816417.7597



CDS Structure of MLOC_51901






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51901.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_51901.1CUST_12694_PI427708083AvailableAvailablecontig_37143 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g13730.1 -2 2e-48 171 84/89 (94%) 13101.m01512 protein WD domain, G-beta repeat domain containing protein, expressed
TAIR PP10 AT4G28450.1 -2 5e-38 142 66/89 (74%) nucleotide binding;protein binding | chr4:14061724-14064582 REVERSE LENGTH=452