MLOC_51896 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.668797.166457.976678.79196
LEAShoots from the seedlings (10 cm shoot stage)7.225655.637696.579236.22909
INF1Young developing inflorescences (5mm)8.5515611.292711.661510.4212
INF2Developing inflorescences (1-1.5 cm)15.818114.519215.51419.7457
ROORoots from the seedlings (10 cm shoot stage)6.688478.627198.2908612.3031
NODDeveloping tillers at six leaf stage, 3rd internode8.2262913.935417.157955.58
CAR5Developing grain, bracts removed (5 DPA)10.206511.100310.120812.6557
CAR15Developing grain, bracts removed (15 DPA)6.471815.862345.8167716.8557



CDS Structure of MLOC_51896






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51896.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_51896.2CUST_12692_PI427708083AvailableAvailablecontig_37140 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g06200.1 +3 3e-148 434 228/313 (73%) 13108.m00621 protein stomatin-like protein 2, putative, expressed
TAIR PP10 AT4G27585.1 +3 2e-126 379 208/323 (64%) SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr4:13766984-13769832 REVERSE LENGTH=411