MLOC_51885 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2200550.2499820.427340.253938
LEAShoots from the seedlings (10 cm shoot stage)0.1897650.06707330.02883420.0839772
INF1Young developing inflorescences (5mm)1.516580.8327620.8522530.849355
INF2Developing inflorescences (1-1.5 cm)2.429553.150752.619882.76733
ROORoots from the seedlings (10 cm shoot stage)0.07013050.1417270.2965490.150323
NODDeveloping tillers at six leaf stage, 3rd internode00.0071548700.057704
CAR5Developing grain, bracts removed (5 DPA)1.040490.6694120.6189130.683481
CAR15Developing grain, bracts removed (15 DPA)0.1780650.2097130.3398460.450977



CDS Structure of MLOC_51885






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51885.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_51885.3CUST_12835_PI427708080AvailableAvailablecontig_37134 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g10110.1 -3 0.0 1048 552/751 (74%) 13102.m01119 protein Leucine Rich Repeat family protein, expressed
TAIR PP10 AT4G22130.1 -3 4e-154 478 285/719 (40%) | Symbols: SRF8 | STRUBBELIG-receptor family 8 | chr4:11723733-11727331 FORWARD LENGTH=703