MLOC_5187 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.66062.511052.173592.22708
LEAShoots from the seedlings (10 cm shoot stage)2.408261.698662.521131.81534
INF1Young developing inflorescences (5mm)3.697984.242614.771782.97589
INF2Developing inflorescences (1-1.5 cm)2.983843.188183.602443.10105
ROORoots from the seedlings (10 cm shoot stage)2.596222.121673.3382.61591
NODDeveloping tillers at six leaf stage, 3rd internode9.111128.096564.0365725.5453
CAR5Developing grain, bracts removed (5 DPA)2.299972.279083.820322.31683
CAR15Developing grain, bracts removed (15 DPA)0.7375770.3376780.2520581.06633



CDS Structure of MLOC_5187






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5187.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5187.5CUST_12691_PI427708083AvailableAvailablecontig_135983 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g45821.1 +1 5e-80 253 134/155 (86%) 13104.m04596 protein expressed protein
TAIR PP10 AT4G22290.1 +1 2e-31 124 69/156 (44%) Ubiquitin-specific protease family C19-related protein | chr4:11783199-11785730 REVERSE LENGTH=445