MLOC_51816 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains16.377114.73313.309214.0847
LEAShoots from the seedlings (10 cm shoot stage)16.70956.32438.812438.52774
INF1Young developing inflorescences (5mm)29.412832.94830.602725.0869
INF2Developing inflorescences (1-1.5 cm)25.087529.82933.395629.9373
ROORoots from the seedlings (10 cm shoot stage)12.622513.744221.83315.0148
NODDeveloping tillers at six leaf stage, 3rd internode25.224227.28319.632674.7373
CAR5Developing grain, bracts removed (5 DPA)12.736514.500214.924712.7562
CAR15Developing grain, bracts removed (15 DPA)3.461912.408343.018436.71847



CDS Structure of MLOC_51816






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51816.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373227NoneNoneNoneNone
MLOC_51816.2CUST_2884_PI427708080AvailableAvailablecontig_37095 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g35980.1 +1 1e-173 492 230/260 (88%) 13110.m03247 protein tetraspanin family protein, putative, expressed
TAIR PP10 AT1G63260.2 +1 7e-130 379 175/256 (68%) | Symbols: TET10 | tetraspanin10 | chr1:23466975-23468945 REVERSE LENGTH=258