MLOC_51743 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.088016.994115.40045.04602
LEAShoots from the seedlings (10 cm shoot stage)7.206565.691636.164485.11738
INF1Young developing inflorescences (5mm)11.932410.271510.17979.21704
INF2Developing inflorescences (1-1.5 cm)13.55111.648111.700413.6396
ROORoots from the seedlings (10 cm shoot stage)1.601114.487143.151274.42603
NODDeveloping tillers at six leaf stage, 3rd internode2.357322.663592.536058.10486
CAR5Developing grain, bracts removed (5 DPA)7.839046.339817.778527.16515
CAR15Developing grain, bracts removed (15 DPA)2.746372.816193.896597.21168



CDS Structure of MLOC_51743






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51743.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250876.1NoneNoneNoneNone
MLOC_51743.1CUST_255_PI427708083AvailableAvailablecontig_37049 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g61930.1 -1 4e-93 305 219/321 (68%) 13101.m06616 protein SAC3/GANP family protein, putative, expressed
TAIR PP10 AT2G39340.1 -1 4e-13 72 87/295 (29%) SAC3/GANP/Nin1/mts3/eIF-3 p25 family | chr2:16424043-16429771 FORWARD LENGTH=1006