MLOC_51719 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.818817.641118.147120.0667
LEAShoots from the seedlings (10 cm shoot stage)21.547727.663623.747421.7227
INF1Young developing inflorescences (5mm)7.982956.93276.657896.59998
INF2Developing inflorescences (1-1.5 cm)3.32452.756072.914543.68165
ROORoots from the seedlings (10 cm shoot stage)17.350118.713716.42124.3712
NODDeveloping tillers at six leaf stage, 3rd internode14.645313.810317.186349.3408
CAR5Developing grain, bracts removed (5 DPA)13.610413.464512.582714.861
CAR15Developing grain, bracts removed (15 DPA)16.447316.639715.52642.6053



CDS Structure of MLOC_51719






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51719.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364770NoneNoneNoneNone
MLOC_51719.1CUST_18070_PI427708080AvailableAvailablecontig_37039 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g44530.7 +3 0.0 704 361/414 (87%) 13104.m04441 protein expressed protein
TAIR PP10 AT1G73390.3 +3 2e-177 517 262/410 (64%) Endosomal targeting BRO1-like domain-containing protein | chr1:27591079-27594148 REVERSE LENGTH=419