MLOC_517 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.698333.940085.254393.99873
LEAShoots from the seedlings (10 cm shoot stage)5.621894.074224.71993.7658
INF1Young developing inflorescences (5mm)6.066046.891686.630035.11258
INF2Developing inflorescences (1-1.5 cm)8.339876.975027.779177.5841
ROORoots from the seedlings (10 cm shoot stage)5.84785.663945.909035.9018
NODDeveloping tillers at six leaf stage, 3rd internode5.843516.353488.006218.7235
CAR5Developing grain, bracts removed (5 DPA)3.439893.026473.650122.8863
CAR15Developing grain, bracts removed (15 DPA)9.945738.5513210.894220.355



CDS Structure of MLOC_517






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_517.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK361033NoneNoneNoneNone
MLOC_517.2CUST_3_PI427708083AvailableAvailablecontig_103671 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g11630.1 -3 4e-86 285 167/231 (72%) 13106.m01262 protein OsFBX192 - F-box domain containing protein, expressed
TAIR PP10 AT4G08980.5 -3 7e-41 156 81/158 (51%) | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-5760108 FORWARD LENGTH=317