MLOC_51513 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.703322.450361.685512.46208
LEAShoots from the seedlings (10 cm shoot stage)9.2411513.789511.43410.4338
INF1Young developing inflorescences (5mm)1.410621.080740.9253751.11542
INF2Developing inflorescences (1-1.5 cm)0.8759481.336261.405771.61816
ROORoots from the seedlings (10 cm shoot stage)0.1105710.4664820.5571390.627317
NODDeveloping tillers at six leaf stage, 3rd internode4.533784.408075.8230614.7515
CAR5Developing grain, bracts removed (5 DPA)5.552315.909624.58716.40521
CAR15Developing grain, bracts removed (15 DPA)0.3822990.3728910.2530720.99276



CDS Structure of MLOC_51513






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51513.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250780.1NoneNoneNoneNone
MLOC_51513.3CUST_2859_PI427708080AvailableAvailablecontig_36951 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g12810.4 -2 0.0 814 453/648 (70%) 13101.m01397 protein retrotransposon protein, putative, unclassified, expressed
TAIR PP10 AT5G25630.1 -2 3e-150 455 235/473 (50%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:8947426-8949424 FORWARD LENGTH=574