MLOC_51450 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains24.125519.501717.295219.1682
LEAShoots from the seedlings (10 cm shoot stage)16.174713.611318.845912.2566
INF1Young developing inflorescences (5mm)30.244630.276229.474724.8797
INF2Developing inflorescences (1-1.5 cm)23.871925.773327.004627.2642
ROORoots from the seedlings (10 cm shoot stage)23.361821.523821.150722.6039
NODDeveloping tillers at six leaf stage, 3rd internode1.803761.739942.624084.85415
CAR5Developing grain, bracts removed (5 DPA)27.513829.771630.852928.2464
CAR15Developing grain, bracts removed (15 DPA)8.434116.340937.1280717.3488



CDS Structure of MLOC_51450






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51450.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356731NoneNoneNoneNone
MLOC_51450.2CUST_2852_PI427708080AvailableAvailablecontig_369281 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g37000.1 +1 2e-141 413 241/282 (85%) 13102.m04050 protein mitochondrial prohibitin complex protein 1, putative, expressed
TAIR PP10 AT5G40770.1 +1 4e-116 347 201/277 (73%) | Symbols: ATPHB3, PHB3 | prohibitin 3 | chr5:16315589-16316621 REVERSE LENGTH=277