MLOC_5142 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 34.2196 | 28.1669 | 24.4451 | 28.9893 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 57.2197 | 45.2147 | 58.6949 | 43.8151 |
| INF1 | Young developing inflorescences (5mm) | 14.2255 | 12.5729 | 15.1922 | 12.2763 |
| INF2 | Developing inflorescences (1-1.5 cm) | 9.53736 | 10.9599 | 8.89911 | 11.6056 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 2.32358 | 5.20905 | 6.61288 | 5.79657 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 29.6 | 51.6271 | 53.1737 | 151.39 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 21.4973 | 27.0122 | 20.4542 | 24.4551 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 2.80006 | 2.61359 | 2.62365 | 6.6502 |
CDS Structure of MLOC_5142
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_5142.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os03g21370.1 |
+3 |
9e-107 |
316 |
160/209 (77%) |
13103.m02560 protein expressed protein |
| TAIR PP10 |
AT5G58250.1 |
+3 |
4e-65 |
208 |
102/173 (59%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2488 (InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:23559558-23560372 FORWARD LENGTH=211 |
