MLOC_51340 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains251.867145.623154.569201.654
LEAShoots from the seedlings (10 cm shoot stage)41.837443.654590.31253.984
INF1Young developing inflorescences (5mm)41.352750.344957.941850.1788
INF2Developing inflorescences (1-1.5 cm)34.732930.76629.611941.5358
ROORoots from the seedlings (10 cm shoot stage)271.984141.884152.065216.231
NODDeveloping tillers at six leaf stage, 3rd internode82.058126.847108.376388.772
CAR5Developing grain, bracts removed (5 DPA)49.859750.417345.756859.2633
CAR15Developing grain, bracts removed (15 DPA)9.056868.277468.8591924.6407



CDS Structure of MLOC_51340






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51340.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362862NoneNoneNoneNone
MLOC_51340.2CUST_2841_PI427708080AvailableAvailablecontig_36899 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g53270.1 -3 3e-140 406 220/251 (88%) 13103.m05815 protein stem-specific protein TSJT1, putative, expressed
TAIR PP10 AT5G43830.1 -3 6e-96 292 148/251 (59%) Aluminium induced protein with YGL and LRDR motifs | chr5:17622593-17624239 REVERSE LENGTH=251