MLOC_51295 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains296.745303.79323.506338.993
LEAShoots from the seedlings (10 cm shoot stage)8.623779.3391.709945.50293
INF1Young developing inflorescences (5mm)0.2140440.1003070.2195050.162484
INF2Developing inflorescences (1-1.5 cm)0.08887190.04306110.0818830.0819315
ROORoots from the seedlings (10 cm shoot stage)223.771194.36150.509234.253
NODDeveloping tillers at six leaf stage, 3rd internode7.999024.103695.4469411.9436
CAR5Developing grain, bracts removed (5 DPA)0.05459830.10372700.0967285
CAR15Developing grain, bracts removed (15 DPA)0.01973760.04608950.02860280.0918679



CDS Structure of MLOC_51295






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51295.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249521.1NoneNoneNoneNone
MLOC_51295.2CUST_2836_PI427708080AvailableAvailablecontig_368878 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g39990.1 +2 0.0 611 311/388 (80%) 13111.m03952 protein patatin, putative, expressed
TAIR PP10 AT4G37050.1 +2 9e-140 414 211/404 (52%) | Symbols: PLP4, PLA V, AtPLAIVC | PATATIN-like protein 4 | chr4:17457261-17459642 REVERSE LENGTH=428