MLOC_5128 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains49.543567.050271.35560.0171
LEAShoots from the seedlings (10 cm shoot stage)91.145657.098364.354760.6101
INF1Young developing inflorescences (5mm)45.30250.214150.866837.7148
INF2Developing inflorescences (1-1.5 cm)36.849445.176440.601242.1612
ROORoots from the seedlings (10 cm shoot stage)38.093752.946645.757458.7955
NODDeveloping tillers at six leaf stage, 3rd internode116.924124.762122.593432.691
CAR5Developing grain, bracts removed (5 DPA)46.586850.385349.691244.4712
CAR15Developing grain, bracts removed (15 DPA)9.56028.832149.803319.4098



CDS Structure of MLOC_5128






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5128.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5128.1CUST_12756_PI427708080AvailableAvailablecontig_135907 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g36770.3 -2 0.0 917 451/515 (88%) 13109.m03632 protein NTMC2Type1.2 protein, putative, expressed
TAIR PP10 AT1G20080.1 -2 0.0 721 351/515 (68%) | Symbols: SYTB, ATSYTB, NTMC2TYPE1.2, NTMC2T1.2, SYT2 | Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:6962236-6964912 FORWARD LENGTH=537