MLOC_5127 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.9112021.362321.541861.31727
LEAShoots from the seedlings (10 cm shoot stage)0.5129341.288910.8620020.780999
INF1Young developing inflorescences (5mm)0.4411540.395990.6669090.400933
INF2Developing inflorescences (1-1.5 cm)0.5184910.4461420.7516310.589551
ROORoots from the seedlings (10 cm shoot stage)0.5217981.594481.039031.8207
NODDeveloping tillers at six leaf stage, 3rd internode0.9309911.066050.9669073.84392
CAR5Developing grain, bracts removed (5 DPA)0.7995710.8919710.9814090.884792
CAR15Developing grain, bracts removed (15 DPA)0.1123190.2059690.08239160.343923



CDS Structure of MLOC_5127






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5127.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5127.1CUST_7255_PI427708083AvailableAvailablecontig_135907 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g36770.3 -3 1e-133 406 234/372 (63%) 13109.m03632 protein NTMC2Type1.2 protein, putative, expressed
TAIR PP10 AT1G20080.1 -3 1e-92 298 178/370 (48%) | Symbols: SYTB, ATSYTB, NTMC2TYPE1.2, NTMC2T1.2, SYT2 | Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:6962236-6964912 FORWARD LENGTH=537