MLOC_51268 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains134.172124.149111.608133.535
LEAShoots from the seedlings (10 cm shoot stage)0.2179910.129980.06817160.118748
INF1Young developing inflorescences (5mm)0.08193720.06395110.1009320.078947
INF2Developing inflorescences (1-1.5 cm)0.2048560.2530560.1392580.261103
ROORoots from the seedlings (10 cm shoot stage)9.536990.44904811.05313.2341
NODDeveloping tillers at six leaf stage, 3rd internode0.06933760.04410640.09712210.148224
CAR5Developing grain, bracts removed (5 DPA)0.6938430.5554250.3406360.585523
CAR15Developing grain, bracts removed (15 DPA)108.308124.199.7731309.72



CDS Structure of MLOC_51268






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51268.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373616NoneNoneNoneNone
MLOC_51268.3CUST_2832_PI427708080AvailableAvailablecontig_36883 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g36600.1 +3 1e-170 489 270/350 (77%) 13102.m03996 protein aldose 1-epimerase, putative, expressed
TAIR PP10 AT3G47800.1 +3 1e-103 316 171/330 (52%) Galactose mutarotase-like superfamily protein | chr3:17634971-17636998 FORWARD LENGTH=358