MLOC_51259 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.884519.085118.060917.4142
LEAShoots from the seedlings (10 cm shoot stage)21.55395.240849.1072711.0764
INF1Young developing inflorescences (5mm)24.920724.602727.663321.1999
INF2Developing inflorescences (1-1.5 cm)30.816332.419829.130934.3005
ROORoots from the seedlings (10 cm shoot stage)7.9149113.972112.84516.485
NODDeveloping tillers at six leaf stage, 3rd internode66.532780.750362.8684273.078
CAR5Developing grain, bracts removed (5 DPA)10.53319.3747310.5859.8426
CAR15Developing grain, bracts removed (15 DPA)4.513873.41163.771358.89725



CDS Structure of MLOC_51259






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51259.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_51259.2CUST_12754_PI427708080AvailableAvailablecontig_368802 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g58130.1 +3 0.0 1452 754/942 (80%) 13104.m06097 protein katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed
TAIR PP10 AT5G23430.1 +3 0.0 760 449/935 (48%) Transducin/WD40 repeat-like superfamily protein | chr5:7894073-7899862 REVERSE LENGTH=837