MLOC_51237 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains19.199422.234624.037118.3677
LEAShoots from the seedlings (10 cm shoot stage)25.663825.655322.57617.6779
INF1Young developing inflorescences (5mm)21.259622.724622.41516.0853
INF2Developing inflorescences (1-1.5 cm)21.194518.776616.464218.2037
ROORoots from the seedlings (10 cm shoot stage)18.480526.162926.647124.0702
NODDeveloping tillers at six leaf stage, 3rd internode30.320210.323813.042529.6732
CAR5Developing grain, bracts removed (5 DPA)17.656121.945119.903116.3002
CAR15Developing grain, bracts removed (15 DPA)9.2542910.9210.622919.9229



CDS Structure of MLOC_51237






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51237.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_51237.1CUST_12671_PI427708083AvailableAvailablecontig_368765 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g38300.2 +1 1e-11 64 29/35 (83%) 13102.m04213 protein SNF7 domain containing protein, putative, expressed
TAIR PP10 AT5G09260.1 +1 2e-11 63 29/35 (83%) | Symbols: VPS20.2 | vacuolar protein sorting-associated protein 20.2 | chr5:2876797-2878355 FORWARD LENGTH=216