MLOC_51205 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.74114.265912.219513.2394
LEAShoots from the seedlings (10 cm shoot stage)10.15744.447754.634775.82177
INF1Young developing inflorescences (5mm)54.936853.397855.55843.4296
INF2Developing inflorescences (1-1.5 cm)54.500757.559848.159256.9004
ROORoots from the seedlings (10 cm shoot stage)4.078759.9945610.556410.8462
NODDeveloping tillers at six leaf stage, 3rd internode1.666552.085247.059999.70812
CAR5Developing grain, bracts removed (5 DPA)14.431313.914815.653113.1139
CAR15Developing grain, bracts removed (15 DPA)4.603431.823762.79667.10466



CDS Structure of MLOC_51205






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51205.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_51205.3CUST_7250_PI427708083AvailableAvailablecontig_368700 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g08330.1 -1 2e-136 414 206/209 (99%) 13111.m00877 protein POLD1 - Putative DNA polymerase delta catalytic subunit, expressed
TAIR PP10 AT5G63960.1 -1 1e-121 374 183/209 (88%) DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases | chr5:25599597-25606672 FORWARD LENGTH=1095