MLOC_51179 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.171072.508112.923232.43056
LEAShoots from the seedlings (10 cm shoot stage)11.665415.483615.46049.96029
INF1Young developing inflorescences (5mm)4.294026.065235.848434.40058
INF2Developing inflorescences (1-1.5 cm)6.569187.298056.635417.09346
ROORoots from the seedlings (10 cm shoot stage)14.78958.27899.635928.71889
NODDeveloping tillers at six leaf stage, 3rd internode24.831134.520965.760699.676
CAR5Developing grain, bracts removed (5 DPA)0.665480.9659260.8451020.753944
CAR15Developing grain, bracts removed (15 DPA)0.4900650.3227690.4391641.02418



CDS Structure of MLOC_51179






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51179.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370733NoneNoneNoneNone
MLOC_51179.2CUST_2820_PI427708080AvailableAvailablecontig_36866 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g43550.1 -2 8e-88 271 158/212 (75%) 13102.m04837 protein cyclin, putative, expressed
TAIR PP10 AT5G07450.1 -2 8e-47 163 85/160 (53%) | Symbols: CYCP4;3 | cyclin p4;3 | chr5:2358418-2359253 REVERSE LENGTH=216