MLOC_51108 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains27.736929.187730.856522.0626
LEAShoots from the seedlings (10 cm shoot stage)23.904730.636437.488419.4176
INF1Young developing inflorescences (5mm)8.59458.586847.666245.48912
INF2Developing inflorescences (1-1.5 cm)12.67338.44710.29419.1248
ROORoots from the seedlings (10 cm shoot stage)35.710835.567528.000229.0626
NODDeveloping tillers at six leaf stage, 3rd internode23.164822.571725.035857.6486
CAR5Developing grain, bracts removed (5 DPA)12.354111.899713.66848.95
CAR15Developing grain, bracts removed (15 DPA)2.532383.018052.586374.88225



CDS Structure of MLOC_51108






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51108.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK358649NoneNoneNoneNone
MLOC_51108.1CUST_2811_PI427708080AvailableAvailablecontig_368538 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g43860.1 +3 0.0 827 527/608 (87%) 13102.m04876 protein amino acid permease, putative, expressed
TAIR PP10 AT1G05940.1 +3 0.0 618 347/486 (71%) | Symbols: CAT9 | cationic amino acid transporter 9 | chr1:1801365-1803942 REVERSE LENGTH=569