MLOC_51097 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.839744.675244.985625.03113
LEAShoots from the seedlings (10 cm shoot stage)11.734112.654316.475311.3443
INF1Young developing inflorescences (5mm)2.746012.998553.360222.39525
INF2Developing inflorescences (1-1.5 cm)1.449651.354792.054181.56141
ROORoots from the seedlings (10 cm shoot stage)5.159016.104834.684136.78294
NODDeveloping tillers at six leaf stage, 3rd internode5.698425.01087.6500517.6149
CAR5Developing grain, bracts removed (5 DPA)2.864083.413563.180692.93399
CAR15Developing grain, bracts removed (15 DPA)0.6427670.2491350.2577430.905418



CDS Structure of MLOC_51097






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51097.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK360028NoneNoneNoneNone
MLOC_51097.1CUST_2809_PI427708080AvailableAvailablecontig_368515 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g66360.1 +2 1e-153 454 228/261 (87%) 13101.m07185 protein 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, putative, expressed
TAIR PP10 AT2G02500.1 +2 2e-111 342 166/240 (69%) | Symbols: ISPD, ATMEPCT, MCT | Nucleotide-diphospho-sugar transferases superfamily protein | chr2:671054-673124 REVERSE LENGTH=302