MLOC_5109 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4444670.6545870.6265050.556864
LEAShoots from the seedlings (10 cm shoot stage)0.7516010.1276610.4458790.362612
INF1Young developing inflorescences (5mm)2.266892.754572.996082.10629
INF2Developing inflorescences (1-1.5 cm)2.289032.45552.172942.44184
ROORoots from the seedlings (10 cm shoot stage)0.1573330.2740110.06808190.276149
NODDeveloping tillers at six leaf stage, 3rd internode0.7411671.164710.8375171.86035
CAR5Developing grain, bracts removed (5 DPA)1.178591.065091.170861.10591
CAR15Developing grain, bracts removed (15 DPA)2.149751.335222.079913.91766



CDS Structure of MLOC_5109






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5109.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5109.1CUST_12731_PI427708080AvailableAvailablecontig_135894 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g52550.1 +2 0.0 808 457/570 (80%) 13101.m05501 protein ABC transporter, ATP-binding protein, putative, expressed
TAIR PP10 AT3G28345.1 +2 1e-166 484 270/576 (47%) ABC transporter family protein | chr3:10593921-10598775 REVERSE LENGTH=1240