- Predicted Gene MLOC_51087
MLOC_51087 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 7.59704 | 8.28355 | 7.36632 | 8.01065 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 7.27294 | 5.1471 | 3.99296 | 4.68791 |
INF1 | Young developing inflorescences (5mm) | 13.6067 | 13.4855 | 14.0082 | 11.4199 |
INF2 | Developing inflorescences (1-1.5 cm) | 13.9992 | 14.1466 | 14.6751 | 15.4154 |
ROO | Roots from the seedlings (10 cm shoot stage) | 7.18997 | 10.2205 | 8.67501 | 11.5869 |
NOD | Developing tillers at six leaf stage, 3rd internode | 6.99203 | 4.50051 | 6.89768 | 16.3845 |
CAR5 | Developing grain, bracts removed (5 DPA) | 5.88432 | 5.88509 | 6.59235 | 5.91238 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.32746 | 1.29972 | 1.224 | 2.953 |
CDS Structure of MLOC_51087
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_51087.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os05g28010.1 |
-3 |
8e-82 |
261 |
144/164 (88%) |
13105.m02880 protein TATA-binding protein-associated factor TAFII55 family protein, putative, expressed |
TAIR PP10 |
AT1G55300.1 |
-3 |
2e-54 |
187 |
103/147 (70%) |
| Symbols: TAF7 | TBP-associated factor 7 | chr1:20628170-20629490 REVERSE LENGTH=203 |