MLOC_51087 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.597048.283557.366328.01065
LEAShoots from the seedlings (10 cm shoot stage)7.272945.14713.992964.68791
INF1Young developing inflorescences (5mm)13.606713.485514.008211.4199
INF2Developing inflorescences (1-1.5 cm)13.999214.146614.675115.4154
ROORoots from the seedlings (10 cm shoot stage)7.1899710.22058.6750111.5869
NODDeveloping tillers at six leaf stage, 3rd internode6.992034.500516.8976816.3845
CAR5Developing grain, bracts removed (5 DPA)5.884325.885096.592355.91238
CAR15Developing grain, bracts removed (15 DPA)1.327461.299721.2242.953



CDS Structure of MLOC_51087






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51087.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373141NoneNoneNoneNone
MLOC_51087.1CUST_2805_PI427708080AvailableAvailablecontig_368502 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g28010.1 -3 8e-82 261 144/164 (88%) 13105.m02880 protein TATA-binding protein-associated factor TAFII55 family protein, putative, expressed
TAIR PP10 AT1G55300.1 -3 2e-54 187 103/147 (70%) | Symbols: TAF7 | TBP-associated factor 7 | chr1:20628170-20629490 REVERSE LENGTH=203