MLOC_51041 FPKM values

FPKM by TreatmentFPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.


Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.187742.026131.567780
LEAShoots from the seedlings (10 cm shoot stage)2.590384.600787.29210
INF1Young developing inflorescences (5mm)1.73792.050261.299940
INF2Developing inflorescences (1-1.5 cm)0.6619820.8588110.5853820
ROORoots from the seedlings (10 cm shoot stage)4.674362.355183.069180
NODDeveloping tillers at six leaf stage, 3rd internode0.4433570.451760.2495620
CAR5Developing grain, bracts removed (5 DPA)4.943867.04866.293740
CAR15Developing grain, bracts removed (15 DPA)1.652961.622931.067140



CDS Structure of MLOC_51041






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51041.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355105NoneNoneNoneNone
MLOC_51041.2CUST_2799_PI427708080AvailableNonecontig_36832 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g39260.1 -1 2e-41 150 119/197 (60%) 13105.m04133 protein zinc finger, C3HC4 type domain containing protein, expressed
TAIR PP10 AT3G11110.1 -1 8e-15 74 27/44 (61%) RING/U-box superfamily protein | chr3:3479979-3480455 FORWARD LENGTH=158