MLOC_51035 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.7479790.3708680.5335790.585119
LEAShoots from the seedlings (10 cm shoot stage)0.195070.1717850.2439170.189954
INF1Young developing inflorescences (5mm)0.1787750.1355020.3453050.20344
INF2Developing inflorescences (1-1.5 cm)0.5777870.3599220.3183010.53109
ROORoots from the seedlings (10 cm shoot stage)0.1019650.1063440.07117440.145801
NODDeveloping tillers at six leaf stage, 3rd internode0.2520340.3590870.4854911.30476
CAR5Developing grain, bracts removed (5 DPA)0.04273180.1013550.1351470.121975
CAR15Developing grain, bracts removed (15 DPA)0.03778320.04254680.05552570.120349



CDS Structure of MLOC_51035






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51035.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_51035.1CUST_7230_PI427708083AvailableAvailablecontig_36829 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g39850.1 +3 7e-40 149 74/112 (66%) 13112.m04139 protein helix-loop-helix DNA-binding domain containing protein
TAIR PP10 AT2G14760.1 +3 2e-38 145 71/126 (56%) basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:6321840-6323312 REVERSE LENGTH=328