- Predicted Gene MLOC_51035
MLOC_51035 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 0.747979 | 0.370868 | 0.533579 | 0.585119 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0.19507 | 0.171785 | 0.243917 | 0.189954 |
INF1 | Young developing inflorescences (5mm) | 0.178775 | 0.135502 | 0.345305 | 0.20344 |
INF2 | Developing inflorescences (1-1.5 cm) | 0.577787 | 0.359922 | 0.318301 | 0.53109 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.101965 | 0.106344 | 0.0711744 | 0.145801 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.252034 | 0.359087 | 0.485491 | 1.30476 |
CAR5 | Developing grain, bracts removed (5 DPA) | 0.0427318 | 0.101355 | 0.135147 | 0.121975 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.0377832 | 0.0425468 | 0.0555257 | 0.120349 |
CDS Structure of MLOC_51035
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_51035.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os12g39850.1 |
+3 |
7e-40 |
149 |
74/112 (66%) |
13112.m04139 protein helix-loop-helix DNA-binding domain containing protein |
TAIR PP10 |
AT2G14760.1 |
+3 |
2e-38 |
145 |
71/126 (56%) |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:6321840-6323312 REVERSE LENGTH=328 |