MLOC_51028 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.526732.785712.826723.00408
LEAShoots from the seedlings (10 cm shoot stage)1.23150.6162780.1196060.520661
INF1Young developing inflorescences (5mm)2.892363.748144.228143.44265
INF2Developing inflorescences (1-1.5 cm)1.680022.104122.3812.46395
ROORoots from the seedlings (10 cm shoot stage)2.633952.086841.16212.17263
NODDeveloping tillers at six leaf stage, 3rd internode5.50553.348140.06850345.55433
CAR5Developing grain, bracts removed (5 DPA)5.3333.823413.935524.60746
CAR15Developing grain, bracts removed (15 DPA)0.1946640.1734530.1660740.492214



CDS Structure of MLOC_51028






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51028.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375573NoneNoneNoneNone
MLOC_51028.2CUST_2797_PI427708080AvailableAvailablecontig_36827 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g34900.1 +2 0.0 658 388/539 (72%) 13108.m03652 protein pectinesterase, putative, expressed
TAIR PP10 AT3G43270.1 +2 3e-136 415 220/424 (52%) Plant invertase/pectin methylesterase inhibitor superfamily | chr3:15222402-15225124 REVERSE LENGTH=527