MLOC_51016 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains35.991336.458232.867539.8791
LEAShoots from the seedlings (10 cm shoot stage)56.034542.109942.407443.6061
INF1Young developing inflorescences (5mm)49.766253.066656.853651.7202
INF2Developing inflorescences (1-1.5 cm)99.770398.1375104.911121.458
ROORoots from the seedlings (10 cm shoot stage)81.655660.282761.957786.9686
NODDeveloping tillers at six leaf stage, 3rd internode16.011426.577830.737295.1002
CAR5Developing grain, bracts removed (5 DPA)87.35190.840879.545295.1192
CAR15Developing grain, bracts removed (15 DPA)101.524105.42397.9036262.688



CDS Structure of MLOC_51016






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51016.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251824.1NoneNoneNoneNone
MLOC_51016.2CUST_249_PI427708083AvailableAvailablecontig_36823 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g02880.1 +2 3e-92 286 132/143 (92%) 13105.m00263 protein splicing factor, arginine/serine-rich 7, putative, expressed
TAIR PP10 AT2G37340.1 +2 2e-79 251 111/143 (78%) | Symbols: RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 | arginine/serine-rich zinc knuckle-containing protein 33 | chr2:15670372-15672331 REVERSE LENGTH=290