MLOC_50973 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains106.22486.9932102.73292.3264
LEAShoots from the seedlings (10 cm shoot stage)78.389561.848957.21454.0255
INF1Young developing inflorescences (5mm)45.639450.455854.290840.4861
INF2Developing inflorescences (1-1.5 cm)36.453736.665739.44341
ROORoots from the seedlings (10 cm shoot stage)83.2823109.367105.236120.838
NODDeveloping tillers at six leaf stage, 3rd internode145.97284.247446.1972248.187
CAR5Developing grain, bracts removed (5 DPA)79.693685.042883.234281.8301
CAR15Developing grain, bracts removed (15 DPA)43.148143.290240.829797.7689



CDS Structure of MLOC_50973






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_50973.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249936.1NoneNoneNoneNone
MLOC_50973.1CUST_2792_PI427708080AvailableAvailablecontig_36803 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g06700.2 +2 3e-119 348 168/186 (90%) 13105.m00722 protein expressed protein
TAIR PP10 AT1G09330.1 +2 2e-91 276 137/180 (76%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 518 Blast hits to 518 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). | chr1:3013003-3014903 REVERSE LENGTH=186