MLOC_50970 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.1407230.06681380.257816
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)7.5980210.90397.9794412.365
CAR15Developing grain, bracts removed (15 DPA)1.692852.561542.314646.81257



CDS Structure of MLOC_50970






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_50970.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_50970.1CUST_7223_PI427708083AvailableAvailablecontig_36802 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g55549.1 -3 8e-31 122 89/149 (60%) 13101.m05858 protein homeobox and START domains containing protein, putative, expressed
TAIR PP10 AT1G79840.1 -3 4e-27 110 84/155 (54%) | Symbols: GL2 | HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain | chr1:30037526-30041013 FORWARD LENGTH=747