MLOC_50927 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.11121.988812.188512.69933
LEAShoots from the seedlings (10 cm shoot stage)2.542931.276471.584221.58404
INF1Young developing inflorescences (5mm)0.0784021000.0707139
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)14.48996.941479.828611.107
NODDeveloping tillers at six leaf stage, 3rd internode6.8097813.301533.693157.3298
CAR5Developing grain, bracts removed (5 DPA)0.686211.208591.290921.49596
CAR15Developing grain, bracts removed (15 DPA)0.3535540.4565780.3627411.23375



CDS Structure of MLOC_50927






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_50927.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_50927.1CUST_7218_PI427708083AvailableAvailablecontig_367754 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g30210.1 +2 4e-39 142 103/192 (54%) 13108.m03126 protein 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed
TAIR PP10 AT1G06650.2 +2 3e-22 94 73/191 (38%) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:2035909-2037186 FORWARD LENGTH=369