MLOC_5085 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.872214.499612.413611.4394
LEAShoots from the seedlings (10 cm shoot stage)14.866414.426916.643111.5362
INF1Young developing inflorescences (5mm)6.361086.91187.057444.94768
INF2Developing inflorescences (1-1.5 cm)8.134346.562287.123087.02579
ROORoots from the seedlings (10 cm shoot stage)5.8208811.07078.6866710.0074
NODDeveloping tillers at six leaf stage, 3rd internode15.368716.512516.351646.8483
CAR5Developing grain, bracts removed (5 DPA)7.505918.662658.942656.90542
CAR15Developing grain, bracts removed (15 DPA)1.129960.799951.181832.08773



CDS Structure of MLOC_5085






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5085.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5085.4CUST_12709_PI427708080AvailableAvailablecontig_135860 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g48680.2 +1 2e-150 466 252/277 (91%) 13101.m05051 protein two pore calcium channel protein 1, putative, expressed
TAIR PP10 AT4G03560.1 +1 1e-98 327 180/282 (64%) | Symbols: ATTPC1, TPC1, ATCCH1, FOU2 | two-pore channel 1 | chr4:1580253-1585691 FORWARD LENGTH=733