MLOC_50821 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains26.862822.612323.590325.8461
LEAShoots from the seedlings (10 cm shoot stage)16.47879.039148.8403510.5048
INF1Young developing inflorescences (5mm)29.620528.667932.116627.187
INF2Developing inflorescences (1-1.5 cm)37.323335.886442.245243.2935
ROORoots from the seedlings (10 cm shoot stage)21.824325.537129.278734.5822
NODDeveloping tillers at six leaf stage, 3rd internode24.574722.972417.778480.919
CAR5Developing grain, bracts removed (5 DPA)33.593334.750331.546634.6278
CAR15Developing grain, bracts removed (15 DPA)13.254510.249210.171528.4135



CDS Structure of MLOC_50821






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_50821.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354091NoneNoneNoneNone
MLOC_50821.1CUST_2777_PI427708080AvailableAvailablecontig_366683 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g36670.1 -3 2e-129 376 182/215 (85%) 13109.m03619 protein peptidyl-prolyl cis-trans isomerase, putative, expressed
TAIR PP10 AT4G34960.1 -3 9e-105 313 147/216 (68%) Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr4:16648865-16650646 FORWARD LENGTH=224