MLOC_50786 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.15418.16716.59315.2567
LEAShoots from the seedlings (10 cm shoot stage)15.560817.169118.775513.5071
INF1Young developing inflorescences (5mm)28.98733.93331.141323.4992
INF2Developing inflorescences (1-1.5 cm)23.74223.86723.705723.5028
ROORoots from the seedlings (10 cm shoot stage)16.163620.740215.694821.1375
NODDeveloping tillers at six leaf stage, 3rd internode7.5394210.627810.358531.865
CAR5Developing grain, bracts removed (5 DPA)27.337826.621229.93824.1591
CAR15Developing grain, bracts removed (15 DPA)10.787410.627710.831721.4261



CDS Structure of MLOC_50786






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_50786.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372026NoneNoneNoneNone
MLOC_50786.3CUST_2775_PI427708080AvailableAvailablecontig_366388 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g49270.2 -3 0.0 1351 687/774 (89%) 13107.m09967 protein AMP deaminase, putative, expressed
TAIR PP10 AT2G38280.2 -3 0.0 1135 565/766 (74%) | Symbols: FAC1, ATAMPD | AMP deaminase, putative / myoadenylate deaminase, putative | chr2:16033767-16038793 REVERSE LENGTH=839