MLOC_5069 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.352079.02498.857678.91003
LEAShoots from the seedlings (10 cm shoot stage)7.668535.393114.335325.39293
INF1Young developing inflorescences (5mm)14.710517.139517.769614.7973
INF2Developing inflorescences (1-1.5 cm)21.279222.679123.618624.8264
ROORoots from the seedlings (10 cm shoot stage)7.903039.889488.8765512.4282
NODDeveloping tillers at six leaf stage, 3rd internode5.411987.7358110.038730.3105
CAR5Developing grain, bracts removed (5 DPA)13.42617.504117.007915.6737
CAR15Developing grain, bracts removed (15 DPA)12.024111.406210.291926.9183



CDS Structure of MLOC_5069






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5069.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5069.1CUST_12698_PI427708080AvailableAvailablecontig_135833 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g51450.1 +2 2e-145 443 236/371 (64%) 13106.m05561 protein PHD-finger domain containing protein, expressed
TAIR PP10 AT2G27980.1 +2 1e-101 333 175/352 (50%) Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain | chr2:11913950-11919741 REVERSE LENGTH=1072