morexGenes - Barley RNA-seq Database

Predicted Gene MLOC_50588

Gene IDMLOC_50588
Source Contig contig_36251

Gene Data

|FPKM Values|
|CDS Structures|
|Gene Cluster Members|
|Homology to Models|

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MLOC_50588 FPKM values

FPKM by Treatment	FPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.

Treatment ID	Treatment Description	Rep 1 FPKM	Rep 2 FPKM	Rep 3 FPKM	Treatment FPKM
EMB	4-day embryos dissected from germinating grains	0.775916	10.2048	3.07135	0
LEA	Shoots from the seedlings (10 cm shoot stage)	9.32472	6.3638	4.20253	0
INF1	Young developing inflorescences (5mm)	10.8512	14.3496	7.38399	0
INF2	Developing inflorescences (1-1.5 cm)	10.8602	14.4425	10.6652	0
ROO	Roots from the seedlings (10 cm shoot stage)	2.56228	4.23171	4.556	0
NOD	Developing tillers at six leaf stage, 3rd internode	5.66704	6.69789	7.4921	0
CAR5	Developing grain, bracts removed (5 DPA)	15.8237	14.7513	9.42908	0
CAR15	Developing grain, bracts removed (15 DPA)	39.0664	35.8457	41.6798	0

CDS Structure of MLOC_50588

Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by AK377027

Cluster member	Probe ID	FPKM by replicate	FPKM by treatment	Source Contig
AK377027	CUST_23117_PI427708080	None	None	None
MLOC_27483.1	None	Available	None	contig_1835725 (Not mapped)
MLOC_28691.1	None	Available	None	contig_1940018 (Not mapped)
MLOC_30623.1	None	Available	None	contig_2114717 (Mapped)
MLOC_31129.3	None	Available	None	contig_215987 (Mapped)
MLOC_34771.2	None	Available	None	contig_2445542 (Not mapped)
MLOC_41744.1	None	Available	None	contig_2603991 (Not mapped)
MLOC_42515.1	None	Available	None	contig_2648486 (Not mapped)
MLOC_46762.3	None	Available	None	contig_295131 (Not mapped)
MLOC_50588.1	None	Available	None	contig_36251 (Not mapped)
MLOC_53620.1	None	Available	None	contig_385163 (Not mapped)
MLOC_70069.1	None	Available	None	contig_57396 (Mapped)
MLOC_70168.1	None	Available	None	contig_575326 (Not mapped)
MLOC_72444.2	None	Available	Available	contig_6167 (Mapped)

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP6	None	-	-	-	-	-
TAIR PP10	None	-	-	-	-	-