MLOC_50567 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains101.81465.061580.169175.6371
LEAShoots from the seedlings (10 cm shoot stage)62.456953.920447.586646.4154
INF1Young developing inflorescences (5mm)115.597130.034145.6797.9884
INF2Developing inflorescences (1-1.5 cm)114.391127.734144.355129.348
ROORoots from the seedlings (10 cm shoot stage)101.863105.724149.285131.214
NODDeveloping tillers at six leaf stage, 3rd internode75.331996.302131.493347.36
CAR5Developing grain, bracts removed (5 DPA)71.181980.905274.24869.2754
CAR15Developing grain, bracts removed (15 DPA)37.429334.258432.822273.9069



CDS Structure of MLOC_50567






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_50567.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_50567.1NoneAvailableAvailablecontig_362150 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g44080.1 +3 4e-65 209 123/123 (100%) 13106.m04627 protein ubiquitin family protein, putative, expressed
TAIR PP10 AT1G31340.1 +3 1e-64 207 122/122 (100%) | Symbols: RUB1, NEDD8, ATRUB1 | related to ubiquitin 1 | chr1:11218076-11219417 REVERSE LENGTH=156