MLOC_50547 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5938940.8399470.2592160.754824
LEAShoots from the seedlings (10 cm shoot stage)0.3003960.9363620.539660.592061
INF1Young developing inflorescences (5mm)0.6742130.8717731.898780.877631
INF2Developing inflorescences (1-1.5 cm)1.510152.561482.007842.14914
ROORoots from the seedlings (10 cm shoot stage)0.9594161.529850.5802731.47231
NODDeveloping tillers at six leaf stage, 3rd internode0.7736340.5743011.018611.94869
CAR5Developing grain, bracts removed (5 DPA)0.352540.3169050.3835250.325736
CAR15Developing grain, bracts removed (15 DPA)00.3829790.2681330.707655



CDS Structure of MLOC_50547






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_50547.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_50547.5CUST_7172_PI427708083AvailableAvailablecontig_361913 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g44160.3 -1 3e-58 187 96/117 (82%) 13112.m04664 protein oxidoreductase, putative, expressed
TAIR PP10 AT5G39940.2 -1 2e-36 132 66/116 (57%) FAD/NAD(P)-binding oxidoreductase family protein | chr5:15987649-15990508 FORWARD LENGTH=458