MLOC_5049 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.152779.514777.634637.46819
LEAShoots from the seedlings (10 cm shoot stage)7.176637.927136.77266.28249
INF1Young developing inflorescences (5mm)18.915116.406615.471313.9798
INF2Developing inflorescences (1-1.5 cm)20.97121.019617.162521.2453
ROORoots from the seedlings (10 cm shoot stage)2.117986.442823.736676.62774
NODDeveloping tillers at six leaf stage, 3rd internode2.192212.933473.122559.37185
CAR5Developing grain, bracts removed (5 DPA)12.90910.68112.238611.0715
CAR15Developing grain, bracts removed (15 DPA)4.708274.48914.7893510.1262



CDS Structure of MLOC_5049






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5049.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5049.1CUST_12686_PI427708080AvailableAvailablecontig_135809 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g47800.1 -3 0.0 1099 588/932 (63%) 13101.m04950 protein AAA-type ATPase family protein, putative, expressed
TAIR PP10 AT3G15120.1 -3 0.0 1113 704/1671 (42%) P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:5088487-5095482 REVERSE LENGTH=1954