MLOC_50486 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.311030.3594550.2481130.312174
LEAShoots from the seedlings (10 cm shoot stage)0.1444191.344061.590330.750964
INF1Young developing inflorescences (5mm)00.08209380.1840740.147549
INF2Developing inflorescences (1-1.5 cm)000.09172940.0619928
ROORoots from the seedlings (10 cm shoot stage)3.33830.325710.2614020.778176
NODDeveloping tillers at six leaf stage, 3rd internode0.1909270.059389800.183215
CAR5Developing grain, bracts removed (5 DPA)00.088939900.0918912
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_50486






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_50486.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_50486.1CUST_7160_PI427708083AvailableAvailablecontig_360683 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g04540.1 -3 2e-137 400 208/225 (92%) 13108.m00435 protein decarboxylase, putative, expressed
TAIR PP10 AT2G20340.1 -3 9e-74 235 118/227 (52%) Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr2:8779804-8782490 FORWARD LENGTH=490