MLOC_50457 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.05848010.150870.06940430.136683
LEAShoots from the seedlings (10 cm shoot stage)0.5647460.6394430.6182320.548702
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0.216478000.183745
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_50457






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_50457.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_50457.1CUST_7150_PI427708083AvailableAvailablecontig_360251 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g12590.1 -2 2e-128 374 185/240 (77%) 13112.m01330 protein NADP-dependent oxidoreductase, putative, expressed
TAIR PP10 AT3G03080.1 -2 1e-106 318 157/242 (65%) Zinc-binding dehydrogenase family protein | chr3:698530-700278 REVERSE LENGTH=350