MLOC_50429 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.454731.798461.673451.70645
LEAShoots from the seedlings (10 cm shoot stage)1.310981.050070.5913960.836033
INF1Young developing inflorescences (5mm)2.880322.868833.599752.57069
INF2Developing inflorescences (1-1.5 cm)3.669542.844853.604853.57663
ROORoots from the seedlings (10 cm shoot stage)1.421961.251653.765681.81348
NODDeveloping tillers at six leaf stage, 3rd internode0.8720990.1857511.686231.29792
CAR5Developing grain, bracts removed (5 DPA)1.871451.797842.488171.94415
CAR15Developing grain, bracts removed (15 DPA)2.576121.403452.047944.65197



CDS Structure of MLOC_50429






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_50429.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_50429.1NoneAvailableAvailablecontig_359971 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g29470.1 +1 1e-42 155 76/82 (93%) 13103.m03388 protein transcription initiation factor IID, putative, expressed
TAIR PP10 AT1G54140.1 +1 1e-26 108 52/82 (63%) | Symbols: TAFII21, TAF9 | TATA binding protein associated factor 21kDa subunit | chr1:20214076-20214869 REVERSE LENGTH=183