MLOC_50389 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.14255.469725.669924.71652
LEAShoots from the seedlings (10 cm shoot stage)5.833741.064841.554882.35014
INF1Young developing inflorescences (5mm)3.798731.68962.172122.16107
INF2Developing inflorescences (1-1.5 cm)1.731241.64161.595161.80963
ROORoots from the seedlings (10 cm shoot stage)2.570572.947263.782823.28955
NODDeveloping tillers at six leaf stage, 3rd internode2.97522.170462.239696.08398
CAR5Developing grain, bracts removed (5 DPA)3.990223.197233.959533.59342
CAR15Developing grain, bracts removed (15 DPA)0.1387380.1035070.201440.334058



CDS Structure of MLOC_50389






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_50389.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_50389.1NoneAvailableAvailablecontig_359389 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g43530.1 +1 4e-41 154 102/143 (71%) 13105.m04585 protein CSLC7 - cellulose synthase-like family C, expressed
TAIR PP10 AT4G07960.1 +1 2e-28 117 66/141 (47%) | Symbols: ATCSLC12, CSLC12 | Cellulose-synthase-like C12 | chr4:4802628-4805114 REVERSE LENGTH=699