MLOC_50349 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.673072.892412.447552.74114
LEAShoots from the seedlings (10 cm shoot stage)2.052911.544311.910251.59824
INF1Young developing inflorescences (5mm)4.11243.767533.505613.29819
INF2Developing inflorescences (1-1.5 cm)2.682643.442373.83463.57639
ROORoots from the seedlings (10 cm shoot stage)2.348941.917124.886432.76956
NODDeveloping tillers at six leaf stage, 3rd internode1.275191.717912.341576.25918
CAR5Developing grain, bracts removed (5 DPA)3.70534.963563.665734.032
CAR15Developing grain, bracts removed (15 DPA)1.178731.248591.394412.92749



CDS Structure of MLOC_50349






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_50349.6
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_50349.6CUST_7141_PI427708083AvailableAvailablecontig_358872 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g12100.1 +3 3e-69 224 110/177 (62%) 13106.m01314 protein mTERF family protein, expressed
TAIR PP10 AT5G64950.1 +3 1e-15 77 49/163 (30%) Mitochondrial transcription termination factor family protein | chr5:25953887-25955062 FORWARD LENGTH=391