MLOC_50291 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains42.863233.81134.364634.8874
LEAShoots from the seedlings (10 cm shoot stage)34.996648.712751.161234.7012
INF1Young developing inflorescences (5mm)15.883113.794811.367611.3769
INF2Developing inflorescences (1-1.5 cm)10.189611.070411.545111.5353
ROORoots from the seedlings (10 cm shoot stage)44.339440.791931.375543.1978
NODDeveloping tillers at six leaf stage, 3rd internode19.56226.434230.364176.5495
CAR5Developing grain, bracts removed (5 DPA)19.692923.571924.248521.3564
CAR15Developing grain, bracts removed (15 DPA)7.954238.228937.7643618.5717



CDS Structure of MLOC_50291






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_50291.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251268.1NoneNoneNoneNone
MLOC_50291.1CUST_2766_PI427708080AvailableAvailablecontig_358051 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g38030.1 -2 1e-170 494 249/314 (79%) 13110.m03467 protein per1-like family protein, putative, expressed
TAIR PP10 AT1G16560.3 -2 3e-109 335 176/317 (56%) Per1-like family protein | chr1:5668945-5670343 FORWARD LENGTH=342