MLOC_50290 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains32.351419.798421.801524.6194
LEAShoots from the seedlings (10 cm shoot stage)14.64165.335148.759338.09458
INF1Young developing inflorescences (5mm)27.987933.909433.218527.788
INF2Developing inflorescences (1-1.5 cm)22.680730.186827.940230.3207
ROORoots from the seedlings (10 cm shoot stage)23.827119.164921.453724.222
NODDeveloping tillers at six leaf stage, 3rd internode18.802420.120213.50759.3208
CAR5Developing grain, bracts removed (5 DPA)15.691216.036315.491315.8714
CAR15Developing grain, bracts removed (15 DPA)3.241822.850622.959027.28423



CDS Structure of MLOC_50290






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_50290.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370270NoneNoneNoneNone
MLOC_50290.1CUST_2765_PI427708080AvailableAvailablecontig_358051 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g02680.2 +3 0.0 563 273/294 (93%) 13103.m00235 protein cyclin-dependent kinase A-1, putative, expressed
TAIR PP10 AT3G48750.1 +3 4e-179 506 243/290 (84%) | Symbols: CDKA;1, CDC2AAT, CDK2, CDC2, CDC2A, CDKA1 | cell division control 2 | chr3:18072238-18074296 FORWARD LENGTH=294