MLOC_5024 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains16.902412.773214.114313.3425
LEAShoots from the seedlings (10 cm shoot stage)27.270654.274851.054532.961
INF1Young developing inflorescences (5mm)5.915226.715415.481944.75337
INF2Developing inflorescences (1-1.5 cm)4.243675.387865.6495.14488
ROORoots from the seedlings (10 cm shoot stage)18.028119.749915.192620.1158
NODDeveloping tillers at six leaf stage, 3rd internode37.033434.248428.683596.8139
CAR5Developing grain, bracts removed (5 DPA)6.478068.361326.718966.53619
CAR15Developing grain, bracts removed (15 DPA)1.861341.875231.992654.15098



CDS Structure of MLOC_5024






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5024.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5024.1CUST_12664_PI427708080AvailableAvailablecontig_135797 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g05520.1 -2 0.0 617 304/343 (89%) 13106.m00537 protein OsMKK1 - putative MAPKK based on amino acid sequence homology, expressed
TAIR PP10 AT4G29810.1 -2 2e-152 446 225/359 (63%) | Symbols: ATMKK2, MKK2, MK1 | MAP kinase kinase 2 | chr4:14593299-14595241 REVERSE LENGTH=363