MLOC_50218 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.328763.528894.680693.93126
LEAShoots from the seedlings (10 cm shoot stage)2.877294.319762.529412.47357
INF1Young developing inflorescences (5mm)4.121784.502016.853863.9734
INF2Developing inflorescences (1-1.5 cm)5.169054.431385.052384.96113
ROORoots from the seedlings (10 cm shoot stage)3.485781.518793.137932.16754
NODDeveloping tillers at six leaf stage, 3rd internode2.104044.965196.9199814.4097
CAR5Developing grain, bracts removed (5 DPA)4.110942.19464.0052.92901
CAR15Developing grain, bracts removed (15 DPA)1.895951.51581.864853.81394



CDS Structure of MLOC_50218






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_50218.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_50218.1CUST_17711_PI427708080AvailableAvailablecontig_356751 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g62680.1 -2 2e-25 102 49/71 (69%) 13103.m06937 protein hypothetical protein
TAIR PP10 AT2G31865.1 -2 2e-12 65 28/56 (50%) | Symbols: PARG2 | poly(ADP-ribose) glycohydrolase 2 | chr2:13546790-13549472 REVERSE LENGTH=522